Transcode from MPEG2 to x264 vie MeGUI, strange sync problem

I recently ripped some movie DVDs to x264 with untouched AC3 audio in MKV containers. Some files turned out to be out of sync Afterwards I noticed that the broken files had one thing in common: When creating the d2v files with MeGuis "D2V Creator", it outputed three files, a ".d2v", a ".d2v.bad" and a ".fix.txt". I included the files as attachment. Can this cause sync errors? Can I fix them?

i had the same problem with staxrip. both use dgindex, so the problem seems to be on the dgindex side, imo.

Do you know a workaround for this?

You should try using the ".d2v.bad" file (with the ".bad" bit removed, of course) instead of the ".d2v" one.